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Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome
Refinement RMS Deviations Key Refinement Restraint Deviation r_scangle_other 67.234 r_mcangle_it 60.148 r_mcangle_other 60.145 r_scbond_other 43.08 r_scbond_it 43.077 r_mcbond_other 37.444 r_mcbond_it 37.441 r_dihedral_angle_2_deg 32.729 r_dihedral_angle_1_deg 22.261 r_dihedral_angle_4_deg 20.549
RMS Deviations Key Refinement Restraint Deviation r_scangle_other 67.234 r_mcangle_it 60.148 r_mcangle_other 60.145 r_scbond_other 43.08 r_scbond_it 43.077 r_mcbond_other 37.444 r_mcbond_it 37.441 r_dihedral_angle_2_deg 32.729 r_dihedral_angle_1_deg 22.261 r_dihedral_angle_4_deg 20.549 r_dihedral_angle_3_deg 19.554 r_angle_refined_deg 2.358 r_angle_other_deg 1.472 r_chiral_restr 0.27 r_bond_refined_d 0.028 r_gen_planes_refined 0.017 r_gen_planes_other 0.006 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 Sample Components X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 135000 Reported Resolution (Å) 4.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Cross-correlation coefficient Overall B Value 204 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 1.25
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 4000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 35714 Calibrated Magnification 35714 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION Gctf MODEL FITTING CCP4 package INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 860000