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The crystal structure of a feruloyl esterase C from Fusarium oxysporum.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WMT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 289.15 30% (v/v) PEG400, 0.1M Tris-HCl pH 8.5 buffer
Crystal Properties Matthews coefficient Solvent content 2.57 52.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.536 α = 90 b = 87.467 β = 106.18 c = 106.565 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2015-01-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 1.2395 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 102.35 98.4 0.096 0.095 3.9 52149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3WMT 2.3 102.35 49493 2634 98.24 0.20842 0.20698 0.2167 0.23486 0.2389 RANDOM 34.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -4.12 -0.15 2.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_dihedral_angle_1_deg 17.77 r_dihedral_angle_4_deg 13.997 r_dihedral_angle_3_deg 11.272 r_long_range_B_refined 1.994 r_long_range_B_other 1.926 r_angle_refined_deg 1.072 r_mcangle_it 1.051 r_mcangle_other 1.051 r_angle_other_deg 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_dihedral_angle_1_deg 17.77 r_dihedral_angle_4_deg 13.997 r_dihedral_angle_3_deg 11.272 r_long_range_B_refined 1.994 r_long_range_B_other 1.926 r_angle_refined_deg 1.072 r_mcangle_it 1.051 r_mcangle_other 1.051 r_angle_other_deg 0.862 r_scangle_other 0.807 r_mcbond_it 0.565 r_mcbond_other 0.565 r_scbond_it 0.437 r_scbond_other 0.437 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7910 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 407
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing