☰ Navigation Tabs
Bacterial asc transporter crystal structure in open to in conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6F2G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 28%PEG400 0,1M
0,1M Ammonium acetate pH8
Crystal Properties Matthews coefficient Solvent content 4.94 75.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.64 α = 90 b = 85.64 β = 90 c = 321.63 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 66.9 99.5 0.097 0.105 0.039 0.999 8.8 7.1 17358 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.46 99.76 1.16 1.247 0.454 0.363 1.5 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6F2G 3.4 24.96 13730 708 82.97 0.23218 0.23042 0.2329 0.26789 0.2701 RANDOM 139.545
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.51 -2.51 5.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.757 r_dihedral_angle_3_deg 22.829 r_dihedral_angle_4_deg 18.451 r_long_range_B_refined 11.674 r_long_range_B_other 11.674 r_dihedral_angle_1_deg 6.4 r_mcangle_it 5.443 r_mcangle_other 5.443 r_scangle_other 5.096 r_mcbond_it 3.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.757 r_dihedral_angle_3_deg 22.829 r_dihedral_angle_4_deg 18.451 r_long_range_B_refined 11.674 r_long_range_B_other 11.674 r_dihedral_angle_1_deg 6.4 r_mcangle_it 5.443 r_mcangle_other 5.443 r_scangle_other 5.096 r_mcbond_it 3.222 r_mcbond_other 3.22 r_scbond_it 2.917 r_scbond_other 2.893 r_angle_refined_deg 2.047 r_angle_other_deg 1.183 r_chiral_restr 0.146 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4251 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement BUSTER refinement autoPROC data scaling PHASER phasing MOLREP phasing PHENIX refinement xia2 data reduction