X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION2910.2 M K/Na tartrate, 20% PEG 3,350
Crystal Properties
Matthews coefficientSolvent content
2.4349.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.152α = 90
b = 123.902β = 90
c = 135.155γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2016-08-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.9787APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.97123.992.430.05221.57.255766
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.0878.50.8321.997.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2AL61.9750.0152861281892.430.173210.171190.21205RANDOM43.065
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.84-1.07-0.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.028
r_dihedral_angle_3_deg14.498
r_dihedral_angle_4_deg13.033
r_long_range_B_refined9.481
r_long_range_B_other9.434
r_scangle_other7.495
r_dihedral_angle_1_deg6.782
r_mcangle_it6.159
r_mcangle_other6.158
r_scbond_it5.174
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.028
r_dihedral_angle_3_deg14.498
r_dihedral_angle_4_deg13.033
r_long_range_B_refined9.481
r_long_range_B_other9.434
r_scangle_other7.495
r_dihedral_angle_1_deg6.782
r_mcangle_it6.159
r_mcangle_other6.158
r_scbond_it5.174
r_scbond_other5.173
r_mcbond_it4.507
r_mcbond_other4.506
r_angle_refined_deg1.788
r_angle_other_deg1.03
r_chiral_restr0.108
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5470
Nucleic Acid Atoms
Solvent Atoms399
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing