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Crystal Structure of the FAK FERM domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AL6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 291 0.2 M K/Na tartrate, 20% PEG 3,350
Crystal Properties Matthews coefficient Solvent content 2.43 49.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.152 α = 90 b = 123.902 β = 90 c = 135.155 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.9787 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 123.9 92.43 0.052 21.5 7.2 55766
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.08 78.5 0.832 1.99 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2AL6 1.97 50.01 52861 2818 92.43 0.17321 0.17119 0.1807 0.21205 0.2182 RANDOM 43.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 -1.07 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.028 r_dihedral_angle_3_deg 14.498 r_dihedral_angle_4_deg 13.033 r_long_range_B_refined 9.481 r_long_range_B_other 9.434 r_scangle_other 7.495 r_dihedral_angle_1_deg 6.782 r_mcangle_it 6.159 r_mcangle_other 6.158 r_scbond_it 5.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.028 r_dihedral_angle_3_deg 14.498 r_dihedral_angle_4_deg 13.033 r_long_range_B_refined 9.481 r_long_range_B_other 9.434 r_scangle_other 7.495 r_dihedral_angle_1_deg 6.782 r_mcangle_it 6.159 r_mcangle_other 6.158 r_scbond_it 5.174 r_scbond_other 5.173 r_mcbond_it 4.507 r_mcbond_other 4.506 r_angle_refined_deg 1.788 r_angle_other_deg 1.03 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5470 Nucleic Acid Atoms Solvent Atoms 399 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing