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Human cSrc SH3 Domain in complex with Choline Kinase fragment 60-69
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M Zinc Acetate
0.1 M Sodium Cacodylate pH 6.5
10% v/v Isopropanol
Crystal Properties Matthews coefficient Solvent content 2.13 42.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.117 α = 90 b = 38.753 β = 95.7 c = 57.966 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2017-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 57.68 90.2 7.45 1.67 39617
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.59
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.5 57.68 20257 1046 95.92 0.18912 0.18717 0.1902 0.22626 0.2332 RANDOM 25.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -0.85 0.03 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.012 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 12.815 r_long_range_B_refined 7.528 r_long_range_B_other 7.44 r_dihedral_angle_1_deg 6.831 r_scangle_other 4.883 r_mcangle_it 4.044 r_mcangle_other 4.043 r_scbond_it 3.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.012 r_dihedral_angle_4_deg 19.323 r_dihedral_angle_3_deg 12.815 r_long_range_B_refined 7.528 r_long_range_B_other 7.44 r_dihedral_angle_1_deg 6.831 r_scangle_other 4.883 r_mcangle_it 4.044 r_mcangle_other 4.043 r_scbond_it 3.25 r_scbond_other 3.247 r_mcbond_it 2.594 r_mcbond_other 2.582 r_angle_refined_deg 1.95 r_angle_other_deg 1.076 r_chiral_restr 0.11 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1156 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOLREP phasing