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Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 25% PEG 3350, 0.2M LiSO4, 0.1M Bis-Tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.34 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.731 α = 90 b = 63.756 β = 90 c = 69.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 50 99.9 0.034 0.036 0.013 15.9 7.4 30573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.67 99.1 0.645 0.717 0.305 0.8 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.64 47.01 29574 917 99.88 0.18822 0.18785 0.2005 0.19939 0.2069 RANDOM 25.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.71 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.554 r_dihedral_angle_4_deg 21.128 r_dihedral_angle_3_deg 11.715 r_dihedral_angle_1_deg 6.702 r_long_range_B_refined 5.454 r_long_range_B_other 5.449 r_scangle_other 3.099 r_mcangle_it 2.501 r_mcangle_other 2.5 r_scbond_it 1.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.554 r_dihedral_angle_4_deg 21.128 r_dihedral_angle_3_deg 11.715 r_dihedral_angle_1_deg 6.702 r_long_range_B_refined 5.454 r_long_range_B_other 5.449 r_scangle_other 3.099 r_mcangle_it 2.501 r_mcangle_other 2.5 r_scbond_it 1.924 r_scbond_other 1.924 r_mcbond_it 1.533 r_mcbond_other 1.532 r_angle_refined_deg 1.355 r_angle_other_deg 0.876 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1715 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement HKL-3000 data scaling PDB_EXTRACT data extraction HKL-3000 data reduction