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Crystal structure of the C-terminal toxin domain of RHS2 from Yersinia entomophaga
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 29% PEG 2000 MME, 0.15 M KBr
Crystal Properties Matthews coefficient Solvent content 1.98 37.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.51 α = 90 b = 54.52 β = 90 c = 100.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 1.07219 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50.41 99.8 0.107 0.111 0.999 11.92 13.523 18821 -3 42.029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 97.7 2.095 2.212 0.399 1 9.688
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 50.41 18821 995 99.81 0.1834 0.181 0.1815 0.2258 0.226 RANDOM 38.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -2 2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_4_deg 12.54 r_dihedral_angle_1_deg 6.714 r_angle_refined_deg 1.824 r_angle_other_deg 1.02 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_4_deg 12.54 r_dihedral_angle_1_deg 6.714 r_angle_refined_deg 1.824 r_angle_other_deg 1.02 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1704 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection XDS data extraction XSCALE data scaling Aimless data reduction SHELXDE phasing DM phasing PDB_EXTRACT data extraction