5T8F

p110delta/p85alpha with taselisib (GDC-0032)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG
Crystal Properties
Matthews coefficientSolvent content
2.6453.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.096α = 90
b = 108.604β = 90
c = 142.223γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2014-01-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.99988SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.9186.3799.90.06320.48.131603
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.913.1699.90.0445.68.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5DXU2.9186.373093666799.90.2430.2420.304RANDOM77.62
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.654.72-7.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.333
r_dihedral_angle_4_deg14.4
r_dihedral_angle_3_deg13.109
r_dihedral_angle_1_deg5.205
r_angle_other_deg2.591
r_long_range_B_refined1.278
r_long_range_B_other1.278
r_angle_refined_deg1.121
r_scangle_other0.921
r_mcangle_it0.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.333
r_dihedral_angle_4_deg14.4
r_dihedral_angle_3_deg13.109
r_dihedral_angle_1_deg5.205
r_angle_other_deg2.591
r_long_range_B_refined1.278
r_long_range_B_other1.278
r_angle_refined_deg1.121
r_scangle_other0.921
r_mcangle_it0.867
r_mcangle_other0.867
r_scbond_it0.58
r_scbond_other0.58
r_mcbond_it0.554
r_mcbond_other0.553
r_chiral_restr0.058
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8502
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing