5YMY | pdb_00005ymy

The structure of the complex between Rpn13 and K48-diUb

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride	90% H2O/10% D2O	150 mM	6.5	760 mmHg	298	Bruker AVANCE III 600
2	3D HNCA	0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride	90% H2O/10% D2O	150 mM	6.5	760 mmHg	298	Bruker AVANCE III 850
3	3D HNCB	0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride	90% H2O/10% D2O	150 mM	6.5	760 mmHg	298	Bruker AVANCE III 850
4	3D HCCH-TOCSY	0.58 mM [U-13C; U-15N; U-2H] Rpn13, 20 mM MES, 0.15 M sodium chloride	90% H2O/10% D2O	150 mM	6.5	760 mmHg	298	Bruker AVANCE III 850
5	filter NOESY	150 mM	6.5	760 mmHg	298	Bruker AVANCE III 850

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	850
2	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	240
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Additional NMR Experimental Information
Details	The author states that they used conjoined torsion angle/rigid body simulated annealing refinement based on 19 inter-molecular NOEs (deposited in this entry), the Rpn13 structure from PDB ID 2R2Y, and the Ub structure from 1UBQ.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	chemical shift assignment	Analysis		CCPN
4	peak picking	Analysis		CCPN