☰ Navigation Tabs
11S globulin from Wrightia tinctoria reveals auxin binding site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EHK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.2 M Sodium citrate tribasic dihydrate, 100 mM Tris hydrochloride pH 8.5, 30% v/v PEG 400
Crystal Properties Matthews coefficient Solvent content 2 38.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.209 α = 90 b = 114.242 β = 90 c = 202.479 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 101.2 94.2 0.068 16.77 3.9 270464 17.63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 92.43 0.8 2.34 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EHK 1.7 101.24 252210 13201 94.24 0.17677 0.17415 0.22718 0.2198 RANDOM 26.427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.74 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.142 r_dihedral_angle_4_deg 19.885 r_dihedral_angle_3_deg 15.172 r_long_range_B_refined 9.393 r_long_range_B_other 9.075 r_dihedral_angle_1_deg 7.211 r_scangle_other 5.644 r_scbond_it 3.758 r_scbond_other 3.742 r_mcangle_it 3.727
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.142 r_dihedral_angle_4_deg 19.885 r_dihedral_angle_3_deg 15.172 r_long_range_B_refined 9.393 r_long_range_B_other 9.075 r_dihedral_angle_1_deg 7.211 r_scangle_other 5.644 r_scbond_it 3.758 r_scbond_other 3.742 r_mcangle_it 3.727 r_mcangle_other 3.727 r_mcbond_it 2.542 r_mcbond_other 2.542 r_angle_refined_deg 2.175 r_angle_other_deg 1.126 r_chiral_restr 0.185 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19049 Nucleic Acid Atoms Solvent Atoms 2098 Heterogen Atoms 282
Software Software Software Name Purpose REFMAC refinement MxCuBE data reduction HKL-2000 data scaling MOLREP phasing