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Choline Kinase Alpha in Complex with TCD-717
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.1 M MES pH 6.5
18% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.53 51.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.95 α = 90 b = 122.35 β = 90 c = 131.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 225 mm CCD 2016-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 30 98.6 13.35 4.88 38250
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.35 89.54 36241 1951 99.44 0.20979 0.20679 0.26834 0.2633 RANDOM 53.832
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 1.85 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.484 r_dihedral_angle_4_deg 17.548 r_dihedral_angle_3_deg 15.536 r_long_range_B_refined 9.507 r_long_range_B_other 9.507 r_scangle_other 6.666 r_mcangle_it 6.133 r_mcangle_other 6.133 r_dihedral_angle_1_deg 5.66 r_scbond_it 4.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.484 r_dihedral_angle_4_deg 17.548 r_dihedral_angle_3_deg 15.536 r_long_range_B_refined 9.507 r_long_range_B_other 9.507 r_scangle_other 6.666 r_mcangle_it 6.133 r_mcangle_other 6.133 r_dihedral_angle_1_deg 5.66 r_scbond_it 4.204 r_scbond_other 4.204 r_mcbond_it 3.892 r_mcbond_other 3.891 r_angle_refined_deg 1.498 r_angle_other_deg 0.993 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5859 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement MOLREP phasing