5UKZ
NMR Solution structure of chemically synthesized antilisterial Pediocin PA-1 M31L analog.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 3.33 mg/mL NA-1H Pediocin PA-1 M31L | trifluoroethanol/water | 0 | 2.8 | 1 atm | 313 | Bruker AvanceIII 600 |
4 | 2D NOESY | 3.33 mg/mL NA-1H Pediocin PA-1 M31L | trifluoroethanol/water | 0 | 2.8 | 1 atm | 313 | Bruker AvanceIII 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AvanceIII | 600 |
NMR Refinement | ||
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Method | Details | Software |
na | For this entry, the authors only used chemical shift values without constraints. The authors used the CS-ROSETTA protocol which allows structure determination of proteins based on chemical shift information alone. | CS-Rosetta |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | TOPSPIN | 3.5 | Bruker Biospin |
2 | refinement | CS-Rosetta | 3.7 | Shen, Vernon, Baker and Bax |
3 | structure calculation | CS-Rosetta | 3.7 | Shen, Vernon, Baker and Bax |