☰ Navigation Tabs
Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 57.509 r_dihedral_angle_2_deg 36.335 r_mcangle_it 24.378 r_dihedral_angle_3_deg 20.397 r_dihedral_angle_4_deg 15.231 r_mcbond_it 13.648 r_scbond_it 11.004 r_dihedral_angle_1_deg 7.842 r_angle_refined_deg 1.659 r_chiral_restr 0.104
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 57.509 r_dihedral_angle_2_deg 36.335 r_mcangle_it 24.378 r_dihedral_angle_3_deg 20.397 r_dihedral_angle_4_deg 15.231 r_mcbond_it 13.648 r_scbond_it 11.004 r_dihedral_angle_1_deg 7.842 r_angle_refined_deg 1.659 r_chiral_restr 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample BG505 SOSIP-sCD4-17b-8ANC195 complex Sample Components CD4 D1-D2 domain 17b Fab BG505 SOSIP trimer 8ANC195 G52K5 Fab
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5175 Reported Resolution (Å) 8.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C3
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details phenix_real.space.refine
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 35
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN2 IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND4 MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION