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Domain-swapped dimer of human Dishevelled2 DEP domain: C-centered monoclinic crystal form crystallised from monomeric fraction
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1 M MES, pH=6.5
0.2 M CaCl2
23% PEG350 MME
Crystal Properties Matthews coefficient Solvent content 2.45 49.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.785 α = 90 b = 59.601 β = 93.64 c = 30.322 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.928190 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 32.7 92 0.107 16.1 13.7 17446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.91 2.416 0.98 13.6 1733
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.84 32.7 16251 852 94.11 0.2195 0.2173 0.2627 0.2576 RANDOM 40.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.08 0.06 2.23 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.493 r_dihedral_angle_4_deg 18.575 r_dihedral_angle_3_deg 16.566 r_dihedral_angle_1_deg 6.612 r_mcangle_it 2.359 r_angle_refined_deg 1.555 r_mcbond_it 1.418 r_mcbond_other 1.414 r_angle_other_deg 0.974 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.493 r_dihedral_angle_4_deg 18.575 r_dihedral_angle_3_deg 16.566 r_dihedral_angle_1_deg 6.612 r_mcangle_it 2.359 r_angle_refined_deg 1.555 r_mcbond_it 1.418 r_mcbond_other 1.414 r_angle_other_deg 0.974 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1504 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Coot model building MxCuBE data collection XDS data reduction XSCALE data scaling Aimless data scaling