5MEV

MCL1 FAB COMPLEX IN COMPLEX WITH COMPOUND 21


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293PEG 8K 10%w/v, PEG 1500 10%w/v
Crystal Properties
Matthews coefficientSolvent content
2.0640.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 166.514α = 90
b = 39.705β = 125.74
c = 103.515γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 X 1M2015-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97626DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.9428.998.40.1340.1950.1280.9746.23.21191983.87
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.943.01890.6370.3751.13.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.9426.451131459798.630.2290.225020.30248RANDOM56.54
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.650.21-0.6-0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.744
r_dihedral_angle_3_deg18.327
r_dihedral_angle_4_deg15.266
r_dihedral_angle_1_deg6.605
r_long_range_B_refined6.562
r_long_range_B_other6.545
r_mcangle_it3.457
r_mcangle_other3.456
r_scangle_other3.402
r_mcbond_it2.037
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.744
r_dihedral_angle_3_deg18.327
r_dihedral_angle_4_deg15.266
r_dihedral_angle_1_deg6.605
r_long_range_B_refined6.562
r_long_range_B_other6.545
r_mcangle_it3.457
r_mcangle_other3.456
r_scangle_other3.402
r_mcbond_it2.037
r_mcbond_other2.034
r_scbond_it1.963
r_scbond_other1.962
r_angle_refined_deg1.329
r_angle_other_deg0.928
r_chiral_restr0.068
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4354
Nucleic Acid Atoms
Solvent Atoms83
Heterogen Atoms51

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing