5M9Z | pdb_00005m9z

Second zinc-binding domain from yeast Pcf11

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	250 uM [U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
2	3D HNCO	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
3	3D HNCACO	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
4	3D HNCA	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
5	3D CBCA(CO)NH	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
6	3D HNCACB	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
7	3D HNHA	250 uM [U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
8	2D 1H-13C HSQC	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	100% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 800
9	3D H(CCO)NH	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM na TRIS, 150 mM na sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
10	3D HCCH-TOCSY	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	100% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 800
11	3D HCCH-TOCSY	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	100% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 800
12	2D 1H-13C HSQC CT	100 uM [U-10% 13C; U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 800
13	3D 1H-15N NOESY	250 uM [U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
14	2D 1H-15N HMBC	250 uM [U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700
15	3D 1H-13C NOESY	230 uM [U-99% 13C; U-99% 15N] Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	100% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 800
16	2D 1H-1H NOESY	360 uM Pcf11, 50 mM TRIS, 150 mM sodium chloride, 50 uM zinc acetate	90% H2O/10% D2O	200 mM	7.5	1 atm	298	Bruker AVANCE 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	700

NMR Refinement
Method	Details	Software
simulated annealing		ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	40
Conformers Submitted Total Number	15
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	collection	TopSpin		Bruker Biospin
2	structure calculation	ARIA		Linge, O'Donoghue and Nilges
3	chemical shift assignment	Sparky		Goddard
4	peak picking	Sparky		Goddard