Annotations: 5M9Z

Second zinc-binding domain from yeast Pcf11

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rogdi_lz	e5m9zA1	A: beta barrels	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21936	Pcf11, C-terminal domain (Pcf11_C)	Pcf11, C-terminal domain	This entry represents the C-terminal domain of Pcf11, a CCHC zinc-finger domain which contains a conserved interface for potential binding partners. Mutational studies revealed that mutations in key residues in this conserved region disrupts 3'-end p ...	This entry represents the C-terminal domain of Pcf11, a CCHC zinc-finger domain which contains a conserved interface for potential binding partners. Mutational studies revealed that mutations in key residues in this conserved region disrupts 3'-end processing [1,2]. Pfc11 is a highly conserved multidomain protein that links transcriptional elongation, 3'-end processing, and transcription termination.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein PCF11	RNA binding binding nucleic acid binding mRNA binding RNA polymerase binding protein binding RNA polymerase II complex binding RNA polymerase core enzyme binding enzyme binding	mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription termination of RNA polymerase II transcription, poly(A)-coupled termination of RNA polymerase II transcription, exosome-dependent	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex mRNA cleavage factor complex intracellular membrane-bounded organelle cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008942	ENTH/VHS	Homologous Superfamily
A	IPR047415	Pcf11, CID domain	Domain
A	IPR054128	Pfc11, Rna14/15 interacting domain	Domain
A	IPR054127	Pcf11, C-terminal domain	Domain
A	IPR006569	CID domain	Domain
A	IPR021605	Pcf11, Clp1-ID	Domain
A	IPR045154	Protein PCF11-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5M9Z | pdb_00005m9z

Second zinc-binding domain from yeast Pcf11

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage