Annotations: 5M9Z

Second zinc-binding domain from yeast Pcf11

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rhv	e5m9zA1	A: alpha arrays	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rhv	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21936	Pcf11, C-terminal domain (Pcf11_C)	Pcf11, C-terminal domain	This entry represents the C-terminal domain of Pcf11, a CCHC zinc-finger domain which contains a conserved interface for potential binding partners. Mutational studies revealed that mutations in key residues in this conserved region disrupts 3'-end p ...	This entry represents the C-terminal domain of Pcf11, a CCHC zinc-finger domain which contains a conserved interface for potential binding partners. Mutational studies revealed that mutations in key residues in this conserved region disrupts 3'-end processing [1,2]. Pfc11 is a highly conserved multidomain protein that links transcriptional elongation, 3'-end processing, and transcription termination.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein PCF11	RNA binding binding nucleic acid binding mRNA binding RNA polymerase binding protein binding RNA polymerase II complex binding RNA polymerase core enzyme binding enzyme binding	mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process DNA-templated transcription termination DNA-templated transcription transcription by RNA polymerase II termination of RNA polymerase II transcription termination of RNA polymerase II transcription, poly(A)-coupled termination of RNA polymerase II transcription, exosome-dependent	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex mRNA cleavage factor complex intracellular membrane-bounded organelle cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008942	ENTH/VHS	Homologous Superfamily
A	IPR047415	Pcf11, CID domain	Domain
A	IPR054128	Pfc11, Rna14/15 interacting domain	Domain
A	IPR054127	Pcf11, C-terminal domain	Domain
A	IPR006569	CID domain	Domain
A	IPR021605	Pcf11, Clp1-ID	Domain
A	IPR045154	Protein PCF11-like	Family