☰ Navigation Tabs
Crystal structure of yeast Hsh49p in complex with Cus1p binding domain.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LSL 5LSL, 1CVJ experimental model PDB 1CVJ 5LSL, 1CVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Equal volumes of 10-15 mg/ml protein solution were mixed with an equal volume of reservoir solution containing 2.45-2.65 M NaCl in 0.1M sodium acetate pH 4.8-4.9
Crystal Properties Matthews coefficient Solvent content 2.31 46.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.083 α = 90 b = 142.083 β = 90 c = 40.355 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 35.52 99.9 0.149 0.171 0.083 0.984 13 4.2 25001
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 100 0.625 0.677 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5LSL, 1CVJ 2.7 35.52 23691 1300 99.93 0.1862 0.1836 0.2108 0.233 0.2516 random 30.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.08 10.08 -20.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.863 r_dihedral_angle_3_deg 16.939 r_dihedral_angle_4_deg 16.275 r_dihedral_angle_1_deg 7.129 r_mcangle_it 3.077 r_mcbond_it 1.978 r_mcbond_other 1.977 r_angle_refined_deg 1.406 r_angle_other_deg 0.943 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.863 r_dihedral_angle_3_deg 16.939 r_dihedral_angle_4_deg 16.275 r_dihedral_angle_1_deg 7.129 r_mcangle_it 3.077 r_mcbond_it 1.978 r_mcbond_other 1.977 r_angle_refined_deg 1.406 r_angle_other_deg 0.943 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5793 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction