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TAR complex with HIV-1 Tat-AFF4-P-TEFb
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OGR PDB ID 4OGR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 crystallized from 50 mM Tris 8.5, 0.2M AmmAcetate, 6 mM MgCl2, 8% PEG 4K at 291 degree K
Crystal Properties Matthews coefficient Solvent content 3.72 66.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.87 α = 90 b = 146.87 β = 90 c = 103.75 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1158 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 5.28 500 99.9 0.258 0.272 0.999 7.4 4988 -3 400.752
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 5.28 5.41 100 0.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ID 4OGR 5.9 500 3595 347 100 0.2169 0.2288 0.3132 0.3168 424.4889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 79.055 79.055 -158.111
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 32.741 c_mcangle_it 25.358 c_scbond_it 22.145 c_mcbond_it 16.339 c_angle_d 0.806 c_bond_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5266 Nucleic Acid Atoms 448 Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose CNS refinement XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction XDS data reduction