☰ Navigation Tabs
STRUCTURE OF INTERFERON LAMBDA 1 RECEPTOR WITH HUMAN KINASE JAK1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 7 mg/ml of protein in 50 mM Hepes buffer (pH 7.5) with 150 mM NaCl, mixesd with 1:1 ratio with
18% (w/v) PEG 3350, 0.2 M amonium formate
Crystal Properties Matthews coefficient Solvent content 2.55 51.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.7 α = 90 b = 53.8 β = 114.72 c = 87.39 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2016-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.00000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 99 98.6 0.077 0.081 0.025 7.8 9.4 40748
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 89.7 0.634 0.89 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 79.38 30056 1080 75.47 0.1707 0.1687 0.179 0.2304 0.2381 RANDOM 50.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.1 0.43 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.718 r_dihedral_angle_3_deg 16.306 r_dihedral_angle_4_deg 15.98 r_mcangle_it 10.503 r_mcbond_it 8.552 r_mcbond_other 8.508 r_dihedral_angle_1_deg 6.908 r_angle_refined_deg 1.852 r_angle_other_deg 1.067 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.718 r_dihedral_angle_3_deg 16.306 r_dihedral_angle_4_deg 15.98 r_mcangle_it 10.503 r_mcbond_it 8.552 r_mcbond_other 8.508 r_dihedral_angle_1_deg 6.908 r_angle_refined_deg 1.852 r_angle_other_deg 1.067 r_chiral_restr 0.108 r_gen_planes_refined 0.024 r_bond_refined_d 0.018 r_gen_planes_other 0.018 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4036 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms
Software Software Software Name Purpose SERGUI data collection SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction