X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.229531% PEG 600, 100 mM ADA, 10 mM HEPES, 100 mM NaF, 50 mM LiNO3
Crystal Properties
Matthews coefficientSolvent content
5.7778.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.655α = 90
b = 87.655β = 90
c = 143.625γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2015-08-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.99986ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4839.299.90.085120.41538347
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.482.581001.41915.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5A432.4837.8936356187399.70.21970.21860.2389RANDOM70.554
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2-24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.022
r_dihedral_angle_3_deg12.58
r_dihedral_angle_4_deg9.333
r_dihedral_angle_1_deg6.318
r_mcangle_it1.832
r_angle_refined_deg1.192
r_mcbond_it1.072
r_mcbond_other1.071
r_angle_other_deg0.858
r_chiral_restr0.064
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.022
r_dihedral_angle_3_deg12.58
r_dihedral_angle_4_deg9.333
r_dihedral_angle_1_deg6.318
r_mcangle_it1.832
r_angle_refined_deg1.192
r_mcbond_it1.072
r_mcbond_other1.071
r_angle_other_deg0.858
r_chiral_restr0.064
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3359
Nucleic Acid Atoms
Solvent Atoms33
Heterogen Atoms168

Software

Software
Software NamePurpose
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction