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Caspase-7 S239E Phosphomimetic
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IBF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 2.1 M Sodium Formate
100 mM Sodium Citrate
Crystal Properties Matthews coefficient Solvent content 3.07 59.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.757 α = 90 b = 88.757 β = 90 c = 185.141 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2011-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.0000 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 76.98 99.53 0.076 37.4 10.9 43569 66.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 99.8 1.8 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3IBF 2.2 76.98 39208 4298 99.53 0.1948 0.1912 0.2006 0.2279 0.2329 RANDOM 66.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 0.77 1.54 -4.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.853 r_dihedral_angle_4_deg 19.119 r_dihedral_angle_3_deg 15.154 r_dihedral_angle_1_deg 6.238 r_mcangle_it 4.433 r_mcbond_other 3.356 r_mcbond_it 3.346 r_angle_refined_deg 1.769 r_angle_other_deg 1.15 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.853 r_dihedral_angle_4_deg 19.119 r_dihedral_angle_3_deg 15.154 r_dihedral_angle_1_deg 6.238 r_mcangle_it 4.433 r_mcbond_other 3.356 r_mcbond_it 3.346 r_angle_refined_deg 1.769 r_angle_other_deg 1.15 r_chiral_restr 0.101 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3734 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 9
Software Software Software Name Purpose HKL-2000 data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing