5J0N
Lambda excision HJ intermediate
ELECTRON MICROSCOPY
Sample |
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Lambda excision HJ intermediate |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK II |
Cryogen Name | ETHANE |
Sample Vitrification Details | 10 second blot followed by plunging into liquid ethane (FEI VITROBOT MARK II). |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 10956 |
Reported Resolution (Å) | 11 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
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Id | 1 | ||||
Refinement Space | RECIPROCAL | ||||
Refinement Protocol | OTHER | ||||
Refinement Target | MLHL | ||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | Highly restrained DEN refinement in CNS |
Data Acquisition | |||||||||
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Detector Type | FEI FALCON II (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 35.5 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TECNAI F30 |
Minimum Defocus (nm) | 2600 |
Maximum Defocus (nm) | 4150 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER |
Nominal Magnification | 78000 |
Calibrated Magnification | 100000 |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | e2boxer | EMAN2 |
IMAGE ACQUISITION | SerialEM | |
CTF CORRECTION | CTFFIND3 | |
MODEL REFINEMENT | CNS | 1.3 |
INITIAL EULER ASSIGNMENT | e2initialmodel | EMAN2 |
FINAL EULER ASSIGNMENT | FREALIGN | 9.11 |
CLASSIFICATION | FREALIGN | 9.11 |
RECONSTRUCTION | FREALIGN | 9.11 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | Built-in correction in Frealign v9 | 66033 |