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Crystal Structure of srGAP2 F-BARx WT Form-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 F-BARx-C280Y was eluted in 25 mM phosphate buffer pH 8, 120 mM NaCl, 1 mM DTT, concentrated to 12 mg/ml, and crystallized in 5% v/v Tacsimate pH=5.5, 12% w/v PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.32 46.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.3 α = 90 b = 29.76 β = 92.99 c = 94.63 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 94.5 99.42 11.12 3.8 28948
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 94.5 27627 1320 99.39 0.20562 0.20299 0.203 0.26013 0.2601 RANDOM 43.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.53 -1.95 0.56 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.631 r_dihedral_angle_4_deg 19.527 r_dihedral_angle_3_deg 18.716 r_long_range_B_refined 7.458 r_dihedral_angle_1_deg 4.639 r_mcangle_it 3.423 r_scbond_it 2.85 r_mcbond_it 2.127 r_angle_refined_deg 1.286 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.631 r_dihedral_angle_4_deg 19.527 r_dihedral_angle_3_deg 18.716 r_long_range_B_refined 7.458 r_dihedral_angle_1_deg 4.639 r_mcangle_it 3.423 r_scbond_it 2.85 r_mcbond_it 2.127 r_angle_refined_deg 1.286 r_chiral_restr 0.095 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3437 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing