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X-Ray structure of a CypA-Alisporivir complex at 1.5 angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CWA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 298 0.1 M tris pH 8.5, 0.2 M MgCl2, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.9 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.904 α = 115.12 b = 68.443 β = 103.17 c = 71.952 γ = 93.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.0332 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 36.248 69.3 0.114 0.999 7.2 6.2 159748
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.16 2.6 3.225 3.912 2.179 0.131 2.3 296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CWA 1.5 36.248 93703 4807 98.2 0.1672 0.166 0.1763 0.1898 0.1718 RANDOM 29.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.55 -0.41 0.29 -0.49 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.418 r_dihedral_angle_1_deg 13.471 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 12.388 r_angle_other_deg 3.857 r_mcangle_it 2.814 r_mcbond_it 2.014 r_mcbond_other 2.014 r_angle_refined_deg 1.844 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.418 r_dihedral_angle_1_deg 13.471 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 12.388 r_angle_other_deg 3.857 r_mcangle_it 2.814 r_mcbond_it 2.014 r_mcbond_other 2.014 r_angle_refined_deg 1.844 r_chiral_restr 0.127 r_gen_planes_other 0.031 r_bond_refined_d 0.019 r_gen_planes_refined 0.015 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5366 Nucleic Acid Atoms Solvent Atoms 408 Heterogen Atoms 4
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MxCuBE data collection