X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP298sodium cacodylate trihydrate, calcium acetate hydrate, PEG 8000
Crystal Properties
Matthews coefficientSolvent content
2.5652.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 160.006α = 90
b = 42.143β = 117.05
c = 136.488γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2014-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.0APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.255094.80.1170.1270.0936.13.536729
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.2957.80.282.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.6150.0123958123199.490.209590.206970.25995RANDOM56.344
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.410.810.13-2.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.988
r_dihedral_angle_3_deg15.82
r_dihedral_angle_4_deg14.222
r_dihedral_angle_1_deg7.233
r_long_range_B_refined3.732
r_long_range_B_other3.714
r_mcangle_it2.349
r_mcangle_other2.349
r_scangle_other1.859
r_angle_refined_deg1.341
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.988
r_dihedral_angle_3_deg15.82
r_dihedral_angle_4_deg14.222
r_dihedral_angle_1_deg7.233
r_long_range_B_refined3.732
r_long_range_B_other3.714
r_mcangle_it2.349
r_mcangle_other2.349
r_scangle_other1.859
r_angle_refined_deg1.341
r_mcbond_it1.287
r_mcbond_other1.287
r_scbond_it1.02
r_scbond_other1.02
r_angle_other_deg0.909
r_chiral_restr0.076
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5577
Nucleic Acid Atoms
Solvent Atoms102
Heterogen Atoms105

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing