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Double acetylated RhoGDI-alpha in complex with RhoA-GDP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HH4 PDB ENTRY 1HH4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 4 M SODIUM FORMATE, 0.1 M SODIUM ACETATE PH 4.5
Crystal Properties Matthews coefficient Solvent content 2.3 46.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.1 α = 90 b = 67.64 β = 90 c = 120.23 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 60.11 99.8 0.097 9.2 3.7 11805 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 98.7 0.364 3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HH4 2.75 60.11 11211 558 99.75 0.20173 0.199 0.1972 0.25598 0.2259 RANDOM 39.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -1.23 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.444 r_dihedral_angle_4_deg 17.943 r_dihedral_angle_3_deg 17.713 r_dihedral_angle_1_deg 6.438 r_long_range_B_refined 5.889 r_long_range_B_other 5.884 r_scangle_other 3.931 r_mcangle_it 3.315 r_mcangle_other 3.314 r_scbond_it 2.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.444 r_dihedral_angle_4_deg 17.943 r_dihedral_angle_3_deg 17.713 r_dihedral_angle_1_deg 6.438 r_long_range_B_refined 5.889 r_long_range_B_other 5.884 r_scangle_other 3.931 r_mcangle_it 3.315 r_mcangle_other 3.314 r_scbond_it 2.394 r_scbond_other 2.392 r_mcbond_it 1.994 r_mcbond_other 1.994 r_angle_refined_deg 1.674 r_angle_other_deg 0.835 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2828 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing