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The structure of DHAR1 from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 Protein 20 mg/ml
20% PEG 8000
0.2M NaK Phosphate
0.1M TRIS
Crystal Properties Matthews coefficient Solvent content 3.19 61.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.92 α = 90 b = 63.92 β = 90 c = 266.26 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 55.3 99.7 30 9.4 30540
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.86 99.3 0.8 3.3 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.81 55.3 28950 1540 99.57 0.16272 0.16107 0.1739 0.19538 0.2105 RANDOM 44.177
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.09 0.17 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.367 r_dihedral_angle_3_deg 12.272 r_dihedral_angle_4_deg 8.685 r_long_range_B_refined 8.512 r_long_range_B_other 8.492 r_dihedral_angle_1_deg 5.673 r_scangle_other 5.047 r_scbond_it 3.499 r_scbond_other 3.438 r_mcangle_it 2.598
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.367 r_dihedral_angle_3_deg 12.272 r_dihedral_angle_4_deg 8.685 r_long_range_B_refined 8.512 r_long_range_B_other 8.492 r_dihedral_angle_1_deg 5.673 r_scangle_other 5.047 r_scbond_it 3.499 r_scbond_other 3.438 r_mcangle_it 2.598 r_mcangle_other 2.597 r_mcbond_it 1.968 r_mcbond_other 1.954 r_angle_refined_deg 1.624 r_angle_other_deg 0.86 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1659 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling