☰ Navigation Tabs
Active form of human C1-inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OAY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 20% PEG3350 w/v and 200 mM KF with a crystallization drop size of 1 microlitre and a protein content of 70% w/v
Crystal Properties Matthews coefficient Solvent content 2.58 52.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.41 α = 90 b = 75.38 β = 90 c = 203.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.953 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 57.4 100 0.065 0.042 0.998 14 4.7 52693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 99.9 0.431 0.622 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2OAY 2.1 57.4 49868 2647 99.71 0.20818 0.20567 0.25697 0.2746 RANDOM 43.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 -0.92 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.451 r_dihedral_angle_4_deg 20.585 r_dihedral_angle_3_deg 14.927 r_dihedral_angle_1_deg 7.255 r_long_range_B_refined 6.869 r_long_range_B_other 6.864 r_scangle_other 4.42 r_mcangle_it 3.954 r_mcangle_other 3.954 r_scbond_it 2.609
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.451 r_dihedral_angle_4_deg 20.585 r_dihedral_angle_3_deg 14.927 r_dihedral_angle_1_deg 7.255 r_long_range_B_refined 6.869 r_long_range_B_other 6.864 r_scangle_other 4.42 r_mcangle_it 3.954 r_mcangle_other 3.954 r_scbond_it 2.609 r_scbond_other 2.608 r_mcbond_it 2.4 r_mcbond_other 2.4 r_angle_refined_deg 2.066 r_angle_other_deg 1.628 r_chiral_restr 0.13 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5946 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing