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E. coli lactaldehyde reductase (FucO) M185C mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM PDB entry 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 12% PEG3350, 200 mM ammonium chloride
Crystal Properties Matthews coefficient Solvent content 2.33 47.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.697 α = 90 b = 63.769 β = 111.15 c = 91.674 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M K-B focusing mirrors 2014-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.7749 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.909 85.5 91.8 0.062 0.077 0.044 8.8 2.7 491073 491073
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.91 0.96 74.6 2.25 2.25 1.669 0.3 2.5 58038
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1RRM 0.91 85.5 466646 24378 91.64 0.12999 0.12908 0.1289 0.14747 0.1469 RANDOM 14.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.4 -0.33 -0.49
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.85 r_sphericity_bonded 17.426 r_long_range_B_refined 8.883 r_long_range_B_other 8.882 r_scangle_other 7.581 r_rigid_bond_restr 6.66 r_scbond_it 6.281 r_scbond_other 6.281 r_angle_refined_deg 2.037 r_mcangle_other 2.021
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.85 r_sphericity_bonded 17.426 r_long_range_B_refined 8.883 r_long_range_B_other 8.882 r_scangle_other 7.581 r_rigid_bond_restr 6.66 r_scbond_it 6.281 r_scbond_other 6.281 r_angle_refined_deg 2.037 r_mcangle_other 2.021 r_mcangle_it 2.017 r_mcbond_it 1.685 r_mcbond_other 1.668 r_angle_other_deg 1.344 r_chiral_restr 0.138 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5711 Nucleic Acid Atoms Solvent Atoms 1167 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOLREP phasing PDB_EXTRACT data extraction XDS data reduction