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THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VS7 PDB ENTRY 2VS7
Crystallization Crystal Properties Matthews coefficient Solvent content 2.37 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.1 α = 90 b = 70.34 β = 119.81 c = 107.17 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 46.5 98.1 0.08 13.3 5.7 68711 2 51.06
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 96.2 0.61 2.5 5.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2VS7 2.75 46.49 1.3 68508 3415 97.1 0.178 0.175 0.1668 0.236 0.2254
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.6981 0.873 9.1106 -3.4125
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 24.372 f_angle_d 1.343 f_chiral_restr 0.065 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4486 Nucleic Acid Atoms 3075 Solvent Atoms 192 Heterogen Atoms 6
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing