4IN7

(M)L214N mutant of the Rhodobacter sphaeroides Reaction Center


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42981 M potassium phosphate pH 7.4, 3.5% 1,2,3-heptanetriol, and 0.1% LDAO precipitant solution; 1.5 M potassium phosphate reservoir solution , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
5.4677.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 139.138α = 90
b = 139.138β = 90
c = 185.14γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-05-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-11.0SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85120.49799.90.09817.27.24893348933
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.8531000.4980.4981.57.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8538.574886046386247499.810.176370.174450.21259RANDOM48.142
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.470.470.47-1.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.057
r_dihedral_angle_3_deg16.125
r_dihedral_angle_4_deg15.804
r_dihedral_angle_1_deg6.897
r_scangle_it3.845
r_angle_refined_deg2.879
r_scbond_it2.351
r_mcangle_it1.51
r_angle_other_deg1.166
r_mcbond_it0.781
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.057
r_dihedral_angle_3_deg16.125
r_dihedral_angle_4_deg15.804
r_dihedral_angle_1_deg6.897
r_scangle_it3.845
r_angle_refined_deg2.879
r_scbond_it2.351
r_mcangle_it1.51
r_angle_other_deg1.166
r_mcbond_it0.781
r_chiral_restr0.104
r_bond_refined_d0.018
r_gen_planes_refined0.01
r_gen_planes_other0.005
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6462
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms838

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
XSCALEdata scaling