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(M)L214N mutant of the Rhodobacter sphaeroides Reaction Center
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 298 1 M potassium phosphate pH 7.4, 3.5% 1,2,3-heptanetriol, and 0.1% LDAO precipitant solution; 1.5 M potassium phosphate reservoir solution , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.46 77.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.138 α = 90 b = 139.138 β = 90 c = 185.14 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 120.497 99.9 0.098 17.2 7.2 48933 48933
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 3 100 0.498 0.498 1.5 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 38.57 48860 46386 2474 99.81 0.17637 0.17445 0.1786 0.21259 0.2115 RANDOM 48.142
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.47 0.47 -1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.057 r_dihedral_angle_3_deg 16.125 r_dihedral_angle_4_deg 15.804 r_dihedral_angle_1_deg 6.897 r_scangle_it 3.845 r_angle_refined_deg 2.879 r_scbond_it 2.351 r_mcangle_it 1.51 r_angle_other_deg 1.166 r_mcbond_it 0.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.057 r_dihedral_angle_3_deg 16.125 r_dihedral_angle_4_deg 15.804 r_dihedral_angle_1_deg 6.897 r_scangle_it 3.845 r_angle_refined_deg 2.879 r_scbond_it 2.351 r_mcangle_it 1.51 r_angle_other_deg 1.166 r_mcbond_it 0.781 r_chiral_restr 0.104 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6462 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 838
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XSCALE data scaling