4ZM6

A unique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain GH3 beta-N-acetylglucosaminidase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2931.3-1.6 M (NH4)2SO4 , 0.1 M Bis-Tris pH 5.5-6.5
Crystal Properties
Matthews coefficientSolvent content
3.6866.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 245.034α = 90
b = 245.034β = 90
c = 94.52γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2013-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.0331PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.888.1999.90.011829.49.571082
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9599.34.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.886.6366951344099.020.230390.229170.25404RANDOM66.83
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.310.31-0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.424
r_dihedral_angle_3_deg16.49
r_dihedral_angle_4_deg15.881
r_dihedral_angle_1_deg5.618
r_long_range_B_refined5.486
r_long_range_B_other5.486
r_mcangle_it3.47
r_mcangle_other3.47
r_scangle_other2.902
r_mcbond_it2.048
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.424
r_dihedral_angle_3_deg16.49
r_dihedral_angle_4_deg15.881
r_dihedral_angle_1_deg5.618
r_long_range_B_refined5.486
r_long_range_B_other5.486
r_mcangle_it3.47
r_mcangle_other3.47
r_scangle_other2.902
r_mcbond_it2.048
r_mcbond_other2.048
r_scbond_it1.66
r_scbond_other1.656
r_angle_refined_deg1.042
r_angle_other_deg0.719
r_chiral_restr0.056
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13215
Nucleic Acid Atoms
Solvent Atoms114
Heterogen Atoms117

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata processing
PHASERphasing
Cootmodel building
PHENIXrefinement