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The chemokine binding protein of orf virus complexed with CCL3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4P5I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 289 0.2M potassium sodium tartrate tetrahydrate, 0.1M sodium citrate tribasic dihydrate pH5.6, 2.0M ammonium citrate
Crystal Properties Matthews coefficient Solvent content 3.63 66.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78 α = 90 b = 78 β = 90 c = 186.02 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.2 CCD ADSC QUANTUM 210r 2011-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95369 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 47.44 99.8 0.117 8.4 4.9 13416
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 100 0.757 1.8 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4P5I 2.9 47.44 12641 692 99.43 0.27041 0.26769 0.2668 0.32302 0.3255 RANDOM 78.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.08 2.08 -4.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.426 r_dihedral_angle_3_deg 18.649 r_dihedral_angle_4_deg 16.997 r_dihedral_angle_1_deg 7.484 r_long_range_B_refined 5.335 r_long_range_B_other 5.334 r_scangle_other 4.285 r_scbond_it 2.659 r_scbond_other 2.657 r_mcangle_it 2.635
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.426 r_dihedral_angle_3_deg 18.649 r_dihedral_angle_4_deg 16.997 r_dihedral_angle_1_deg 7.484 r_long_range_B_refined 5.335 r_long_range_B_other 5.334 r_scangle_other 4.285 r_scbond_it 2.659 r_scbond_other 2.657 r_mcangle_it 2.635 r_mcangle_other 2.634 r_mcbond_it 1.587 r_mcbond_other 1.587 r_angle_refined_deg 1.444 r_angle_other_deg 0.795 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1852 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing