X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52932 M ammonium sulfate, 2% PEG400, 0.1 M HEPES sodium
Crystal Properties
Matthews coefficientSolvent content
4.572.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.659α = 90
b = 126.659β = 90
c = 63.271γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2014-06-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9786APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7541.44299.40.0730.0350.99814.35.537974
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.781001.0390.4810.6651.55.72114

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUTPDB entry 4O621.7541.442158099.380.17770.17710.1922THIN SHELLS (SFTOOLS)33.923
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.56-0.28-0.561.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.305
r_dihedral_angle_4_deg19.641
r_dihedral_angle_3_deg10.59
r_dihedral_angle_1_deg6.231
r_mcangle_it2.568
r_mcbond_it1.793
r_mcbond_other1.789
r_angle_refined_deg1.606
r_angle_other_deg0.982
r_chiral_restr0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.305
r_dihedral_angle_4_deg19.641
r_dihedral_angle_3_deg10.59
r_dihedral_angle_1_deg6.231
r_mcangle_it2.568
r_mcbond_it1.793
r_mcbond_other1.789
r_angle_refined_deg1.606
r_angle_other_deg0.982
r_chiral_restr0.108
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1483
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata scaling
Cootmodel building
PHASERphasing