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Catalytic domain of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 293 17.5% (w/v) PEG 8000, 0.1 M Sodium cacodylate, 0.2 M Sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.06 40.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.403 α = 90 b = 124.403 β = 90 c = 45.786 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2007-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 1.00000 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 100 95.5 24.81 8.8 36155
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 20 34223 1800 95.37 0.20261 0.20013 0.24905 0.2219 RANDOM 21.908
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.06 -0.13 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.755 r_dihedral_angle_4_deg 17.589 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 6.413 r_scangle_it 3.724 r_scbond_it 2.612 r_angle_refined_deg 1.623 r_mcangle_it 1.506 r_mcbond_it 1.019 r_symmetry_hbond_refined 0.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.755 r_dihedral_angle_4_deg 17.589 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 6.413 r_scangle_it 3.724 r_scbond_it 2.612 r_angle_refined_deg 1.623 r_mcangle_it 1.506 r_mcbond_it 1.019 r_symmetry_hbond_refined 0.798 r_nbtor_refined 0.306 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3098 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing