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Crystal structure of the PTB domain of SHC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277.15 0.8 M sodium/potassium tartrate, 0.1 M Hepes pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.86 56.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.91 α = 90 b = 126.79 β = 90 c = 50.4 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 28.98 99.9 0.06 13.4 5.3 17585 17581 35.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.97 100 0.823 2.1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.87 28.98 16660 912 99.84 0.16887 0.16764 0.176 0.19096 0.2047 RANDOM 47.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.72 0.75 -2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.453 r_dihedral_angle_4_deg 24.51 r_dihedral_angle_3_deg 13.292 r_long_range_B_refined 8.051 r_long_range_B_other 8.049 r_dihedral_angle_1_deg 6.807 r_scangle_other 3.295 r_mcangle_it 2.345 r_mcangle_other 2.345 r_scbond_it 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.453 r_dihedral_angle_4_deg 24.51 r_dihedral_angle_3_deg 13.292 r_long_range_B_refined 8.051 r_long_range_B_other 8.049 r_dihedral_angle_1_deg 6.807 r_scangle_other 3.295 r_mcangle_it 2.345 r_mcangle_other 2.345 r_scbond_it 2.16 r_scbond_other 2.156 r_angle_refined_deg 1.644 r_mcbond_it 1.531 r_mcbond_other 1.519 r_angle_other_deg 0.913 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1201 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing