☰ Navigation Tabs
Crystal structure of Anabaena Alr3699/HepE in complex with UDP-glucose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 1.5M Li2SO4, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.55 72.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.228 α = 90 b = 130.228 β = 90 c = 157.359 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97923 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 50 99.7 0.091 15.52 4.6 56994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.57 99.9 0.508 3.79 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4XSO 2.39 33.94 56991 2893 97.16 0.19566 0.19434 0.1988 0.22041 0.2223 RANDOM 53.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.72 -0.72 -0.72 2.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.567 r_dihedral_angle_4_deg 22.074 r_dihedral_angle_3_deg 13.765 r_long_range_B_refined 8.261 r_long_range_B_other 8.251 r_scangle_other 6.421 r_dihedral_angle_1_deg 5.974 r_mcangle_it 5.009 r_mcangle_other 5.009 r_scbond_it 4.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.567 r_dihedral_angle_4_deg 22.074 r_dihedral_angle_3_deg 13.765 r_long_range_B_refined 8.261 r_long_range_B_other 8.251 r_scangle_other 6.421 r_dihedral_angle_1_deg 5.974 r_mcangle_it 5.009 r_mcangle_other 5.009 r_scbond_it 4.142 r_scbond_other 4.142 r_mcbond_it 3.422 r_mcbond_other 3.422 r_angle_refined_deg 1.508 r_angle_other_deg 0.759 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5574 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 122
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling MOLREP model building HKL-2000 data extraction MOLREP phasing