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Crystal structure of flagellar accessory protein FlaH from Methanocaldococcus jannaschii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 283 0.1 M HEPES, 0.65 M Rb2SO4
Crystal Properties Matthews coefficient Solvent content 2.79 55.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.96 α = 90 b = 130.96 β = 90 c = 89.081 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-05-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.97886, 0.97944 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 100 11.9 10.6 45022
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 50 42807 2182 99.96 0.20687 0.20552 0.2165 0.23296 0.2428 RANDOM 68.069
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 0.52 1.03 -3.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.813 r_dihedral_angle_4_deg 21.083 r_dihedral_angle_3_deg 16.041 r_long_range_B_other 7.379 r_long_range_B_refined 7.373 r_dihedral_angle_1_deg 6.897 r_scangle_other 4.416 r_mcangle_it 3.496 r_mcangle_other 3.495 r_scbond_it 2.977
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.813 r_dihedral_angle_4_deg 21.083 r_dihedral_angle_3_deg 16.041 r_long_range_B_other 7.379 r_long_range_B_refined 7.373 r_dihedral_angle_1_deg 6.897 r_scangle_other 4.416 r_mcangle_it 3.496 r_mcangle_other 3.495 r_scbond_it 2.977 r_scbond_other 2.977 r_mcbond_it 2.326 r_mcbond_other 2.324 r_angle_refined_deg 1.854 r_angle_other_deg 1.418 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5378 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement