4W9Q

The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-3-[2-(3,4-dimethoxyphenoxy)ethyl]-5-ethyl-3,10-diazabicyclo[4.3.1]decan-2-one


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529337 % PEG-3350, 8 % DMSO, 2 mM ligand, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3247.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.044α = 90
b = 54.638β = 90
c = 56.779γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2010-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.8SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0856.77994.20.0620.0620.0720.03710.53.65339353393
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.081.1491.50.350.350.2042.23.87473

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3O5Q1.082050708261793.910.15180.15090.1692RANDOM8.146
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.210.120.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.572
r_dihedral_angle_3_deg12.448
r_dihedral_angle_4_deg7.392
r_dihedral_angle_1_deg6.973
r_sphericity_free5.216
r_scangle_it3.329
r_sphericity_bonded2.842
r_scbond_it2.676
r_mcangle_it1.816
r_angle_refined_deg1.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.572
r_dihedral_angle_3_deg12.448
r_dihedral_angle_4_deg7.392
r_dihedral_angle_1_deg6.973
r_sphericity_free5.216
r_scangle_it3.329
r_sphericity_bonded2.842
r_scbond_it2.676
r_mcangle_it1.816
r_angle_refined_deg1.72
r_mcbond_it1.419
r_rigid_bond_restr1.264
r_angle_other_deg0.852
r_mcbond_other0.507
r_chiral_restr0.331
r_symmetry_vdw_other0.239
r_nbd_refined0.205
r_nbd_other0.191
r_xyhbond_nbd_refined0.188
r_nbtor_refined0.181
r_symmetry_vdw_refined0.169
r_symmetry_hbond_refined0.143
r_nbtor_other0.095
r_bond_refined_d0.01
r_bond_other_d0.008
r_gen_planes_refined0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms982
Nucleic Acid Atoms
Solvent Atoms224
Heterogen Atoms37

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XSCALEdata scaling
XDSdata reduction
XSCALEdata reduction