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Structure of a selenomethionine derivative of the GH76 alpha- mannanase BT2949 Bacteroides thetaiotaomicron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 1.5 M AMMONIUM TARTRATE PH 7.2
Crystal Properties Matthews coefficient Solvent content 3.44 64.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.695 α = 90 b = 120.743 β = 90 c = 126.161 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.5 99.9 0.08 14.2 7.9 115956 -3.7 14.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 99.9 0.44 3.4 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 126.16 110076 5813 99.92 0.14872 0.14768 0.1682 0.16814 0.1843 RANDOM 22.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 1.96 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.353 r_dihedral_angle_4_deg 22.081 r_dihedral_angle_3_deg 12.413 r_dihedral_angle_1_deg 5.504 r_scangle_it 3.43 r_scbond_it 2.189 r_mcangle_it 1.932 r_angle_refined_deg 1.382 r_mcbond_it 1.312 r_mcbond_other 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.353 r_dihedral_angle_4_deg 22.081 r_dihedral_angle_3_deg 12.413 r_dihedral_angle_1_deg 5.504 r_scangle_it 3.43 r_scbond_it 2.189 r_mcangle_it 1.932 r_angle_refined_deg 1.382 r_mcbond_it 1.312 r_mcbond_other 1.31 r_angle_other_deg 0.942 r_symmetry_vdw_refined 0.379 r_nbd_refined 0.266 r_nbtor_refined 0.191 r_nbd_other 0.168 r_xyhbond_nbd_refined 0.128 r_symmetry_vdw_other 0.111 r_chiral_restr 0.089 r_symmetry_hbond_refined 0.089 r_nbtor_other 0.082 r_xyhbond_nbd_other 0.027 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5801 Nucleic Acid Atoms Solvent Atoms 1017 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELX phasing