X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4G9P 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52760.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 276K
Crystal Properties
Matthews coefficientSolvent content
2.754.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.73α = 90
b = 62.14β = 127.6
c = 87.04γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2014-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.43097.60.04214.53931869095022
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.594.80.4892.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4G9P1.4109094986401454897.880.112150.110540.14254RANDOM21.236
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.040.64-0.18
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.2
r_dihedral_angle_2_deg33.436
r_dihedral_angle_4_deg15.677
r_sphericity_bonded14.668
r_dihedral_angle_3_deg12.791
r_rigid_bond_restr6.41
r_scangle_other6.398
r_long_range_B_other6.154
r_long_range_B_refined6.153
r_dihedral_angle_1_deg5.632
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.2
r_dihedral_angle_2_deg33.436
r_dihedral_angle_4_deg15.677
r_sphericity_bonded14.668
r_dihedral_angle_3_deg12.791
r_rigid_bond_restr6.41
r_scangle_other6.398
r_long_range_B_other6.154
r_long_range_B_refined6.153
r_dihedral_angle_1_deg5.632
r_scbond_it5.628
r_scbond_other5.627
r_mcangle_other3.698
r_mcangle_it3.697
r_mcbond_it3.205
r_mcbond_other3.199
r_angle_refined_deg2.764
r_angle_other_deg1.444
r_chiral_restr0.249
r_bond_refined_d0.025
r_gen_planes_refined0.011
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3072
Nucleic Acid Atoms
Solvent Atoms382
Heterogen Atoms84

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling