X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherunpublished in house Fab fragment structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62930.15M ammonium sulfate, 0.1M MES, 15%PEG 4000, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4148.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.094α = 90
b = 119.62β = 117.15
c = 96.181γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110PIXELPSI PILATUS 6M2011-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3511999.90.05710.293.477471374645
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.499.90.653.533658

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTunpublished in house Fab fragment structure2.51196279758977313299.910.227990.225470.27446RANDOM78.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.244.17-2.72-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.185
r_dihedral_angle_4_deg14.784
r_dihedral_angle_3_deg13.842
r_dihedral_angle_1_deg5.638
r_long_range_B_refined5.383
r_long_range_B_other5.342
r_mcangle_it1.929
r_mcangle_other1.929
r_scangle_other1.555
r_mcbond_it1.109
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.185
r_dihedral_angle_4_deg14.784
r_dihedral_angle_3_deg13.842
r_dihedral_angle_1_deg5.638
r_long_range_B_refined5.383
r_long_range_B_other5.342
r_mcangle_it1.929
r_mcangle_other1.929
r_scangle_other1.555
r_mcbond_it1.109
r_mcbond_other1.108
r_angle_refined_deg0.994
r_scbond_it0.966
r_scbond_other0.887
r_angle_other_deg0.641
r_chiral_restr0.058
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13109
Nucleic Acid Atoms
Solvent Atoms336
Heterogen Atoms105

Software

Software
Software NamePurpose
DA+data collection
PHASERphasing
REFMACrefinement
XDSdata reduction
SADABSdata scaling