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Crystal structure of Rhodostomin R46E mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 pH 8.5 0.1M Tris, 0.2M (NH4)2SO4, 25% PEG4000,, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.92 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.01 α = 90 b = 74.046 β = 115.55 c = 29.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Vertically Focusing Mirror, Horizontally Focusing Single Crystal Si(111) Bent Monochromator 2013-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.97512 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 95.8 24.7 4.2 10761 10307 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 30 9909 9431 478 98.19 0.16986 0.16636 0.1754 0.23648 0.1985 RANDOM 32.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 -2.4 -0.46 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.577 r_dihedral_angle_3_deg 17.256 r_dihedral_angle_4_deg 16.429 r_scangle_it 9.112 r_dihedral_angle_1_deg 6.094 r_scbond_it 5.622 r_mcangle_it 3.447 r_rigid_bond_restr 2.646 r_mcbond_it 2.028 r_angle_refined_deg 1.945
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.577 r_dihedral_angle_3_deg 17.256 r_dihedral_angle_4_deg 16.429 r_scangle_it 9.112 r_dihedral_angle_1_deg 6.094 r_scbond_it 5.622 r_mcangle_it 3.447 r_rigid_bond_restr 2.646 r_mcbond_it 2.028 r_angle_refined_deg 1.945 r_chiral_restr 0.139 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 924 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling