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Crystal structure of goat lactoperoxidase in complex with octopamine at 2.1 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 Sodium nitrate, PEG3350, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.947 α = 90 b = 80.356 β = 102.81 c = 75.391 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARMOSAIC 225 mm CCD Mirror 2014-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.095 73.52 100 0.081 28.1 4 36750 36750
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.794 1.8 4.1 1822
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 73.51 36750 33642 1768 95.74 0.20819 0.20819 0.2045 0.2196 0.27831 0.2863 RANDOM 65.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.63 3.49 -6.38 7.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.196 r_dihedral_angle_3_deg 15.53 r_dihedral_angle_4_deg 12.443 r_long_range_B_refined 10.981 r_long_range_B_other 10.981 r_scangle_other 7.444 r_mcangle_it 7.069 r_mcangle_other 7.068 r_dihedral_angle_1_deg 6.859 r_scbond_it 5.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.196 r_dihedral_angle_3_deg 15.53 r_dihedral_angle_4_deg 12.443 r_long_range_B_refined 10.981 r_long_range_B_other 10.981 r_scangle_other 7.444 r_mcangle_it 7.069 r_mcangle_other 7.068 r_dihedral_angle_1_deg 6.859 r_scbond_it 5.195 r_scbond_other 5.191 r_mcbond_it 4.917 r_mcbond_other 4.898 r_angle_refined_deg 1.665 r_angle_other_deg 0.852 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4758 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 149
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling