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Monomeric form of a single mutant (F363R) of Mycobacterial Adenylyl cyclase Rv1625c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ET6 PDB ENTRY 3ET6.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 293 0.15M Ammonium sulphate, 0.1M Bis-Tris pH 5.5, 30% PEG 10K
Crystal Properties Matthews coefficient Solvent content 2.17 43.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.89 α = 90 b = 67.37 β = 90 c = 101.55 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-12-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 40.58 98.98 0.076 19.8 6.6 12712
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.103 97.65 0.452 4.3 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ET6. 2.05 40.58 12712 663 98.98 0.18176 0.17918 0.1793 0.23331 0.2345 RANDOM 25.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.48 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.877 r_dihedral_angle_4_deg 16.067 r_dihedral_angle_3_deg 14.096 r_dihedral_angle_1_deg 6.211 r_angle_refined_deg 1.728 r_chiral_restr 0.133 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.877 r_dihedral_angle_4_deg 16.067 r_dihedral_angle_3_deg 14.096 r_dihedral_angle_1_deg 6.211 r_angle_refined_deg 1.728 r_chiral_restr 0.133 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1445 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 85
Software Software Software Name Purpose REFMAC refinement