3ET6

The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase.

Winger, J.A.Derbyshire, E.R.Lamers, M.H.Marletta, M.A.Kuriyan, J.

(2008) Bmc Struct.Biol. 8: 42-42

  • DOI: 10.1186/1472-6807-8-42

  • PubMed Abstract: 
  • Soluble guanylate cyclases generate cyclic GMP when bound to nitric oxide, thereby linking nitric oxide levels to the control of processes such as vascular homeostasis and neurotransmission. The guanylate cyclase catalytic module, for which no struct ...

    Soluble guanylate cyclases generate cyclic GMP when bound to nitric oxide, thereby linking nitric oxide levels to the control of processes such as vascular homeostasis and neurotransmission. The guanylate cyclase catalytic module, for which no structure has been determined at present, is a class III nucleotide cyclase domain that is also found in mammalian membrane-bound guanylate and adenylate cyclases.


    Organizational Affiliation

    Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA. wingerj@berkeley.edu




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Soluble guanylyl cyclase beta
A
190Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CYG12
Find proteins for Q5YLC2 (Chlamydomonas reinhardtii)
Go to UniProtKB:  Q5YLC2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Soluble guanylyl cyclase beta
B
190Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: CYG12
Find proteins for Q5YLC2 (Chlamydomonas reinhardtii)
Go to UniProtKB:  Q5YLC2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CAS
Query on CAS
A, B
L-PEPTIDE LINKINGC5 H12 As N O2 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.172 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 123.678α = 90.00
b = 123.678β = 90.00
c = 62.822γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling
BOSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-10-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance