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Crystal Structure of BRD4(1) bound to inhibitor XD46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 NaCitrate, PEG 3,350, pH 7.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.42 α = 90 b = 43.9 β = 90 c = 77.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ VARIMAX VHF Focussing mirrors 2013-01-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38.765 99.2 0.136 6 2.9 6808
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 99.7 0.307 3.3 2.9 646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 12.4 6785 320 98.76 0.1946 0.1921 0.1978 0.2421 0.2413 RANDOM 13.5877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 -0.65 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.382 r_dihedral_angle_4_deg 17.166 r_dihedral_angle_3_deg 14.646 r_dihedral_angle_1_deg 5.27 r_angle_refined_deg 1.307 r_angle_other_deg 0.771 r_mcangle_it 0.292 r_mcbond_it 0.162 r_mcbond_other 0.161 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.382 r_dihedral_angle_4_deg 17.166 r_dihedral_angle_3_deg 14.646 r_dihedral_angle_1_deg 5.27 r_angle_refined_deg 1.307 r_angle_other_deg 0.771 r_mcangle_it 0.292 r_mcbond_it 0.162 r_mcbond_other 0.161 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1062 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 15
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction