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Crystal structure of Canavalia maritima seeds lectin (ConM) co-crystalized with gamma-aminobutyric acid (GABA) and soaked with adenine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.0 M Ammonium sulphate, pH 8.5 , VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.24 45.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.99 α = 90 b = 70.41 β = 90 c = 97.05 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MAR CCD 165 mm 2010-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.427 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 57 99.78 0.071 0.071 5.7 4.7 17782 16822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.99 99.9 0.366 0.366 2.1 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 57 17782 16822 960 99.78 0.2259 0.22438 0.22227 0.2178 0.26413 0.263 RANDOM 29.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -6.89 6.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.317 r_dihedral_angle_3_deg 18.555 r_dihedral_angle_4_deg 15.112 r_sphericity_free 14.294 r_sphericity_bonded 9.916 r_dihedral_angle_1_deg 8.971 r_scangle_it 6.113 r_scbond_it 4.519 r_mcangle_it 3.075 r_rigid_bond_restr 2.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.317 r_dihedral_angle_3_deg 18.555 r_dihedral_angle_4_deg 15.112 r_sphericity_free 14.294 r_sphericity_bonded 9.916 r_dihedral_angle_1_deg 8.971 r_scangle_it 6.113 r_scbond_it 4.519 r_mcangle_it 3.075 r_rigid_bond_restr 2.74 r_angle_refined_deg 2.577 r_mcbond_it 2.086 r_chiral_restr 0.174 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1761 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 19
Software Software Software Name Purpose MOSFLM data reduction MOLREP phasing REFMAC refinement SCALA data scaling